- Introduction
- Getting Started
- Guides and Tutorials
- Introduction to Terra
- Introduction to Dockstore
- Understanding Cloud Costs
- Account Setup
- Overview of Account Setup
- Obtaining a Google ID
- Creating a Terra Account
- Billing Setup
- Overview of Billing Concepts
- Creating a Google Cloud Billing Account
- Accessing Data
- Discovering Data
- Requesting Data Access
- Data Access Controls
- Bringing Your Own Data
- Running Analysis Workflows
- Using Example Workspaces
- Running GATK in Terra
- Running Galaxy Workflows from Dockstore
- Running Interactive Analyses
- Running Jupyter Notebooks in AnVIL
- Running R / Bioconductor in AnVILL
- Running Galaxy in AnVIL
- MOOC
- What is AnVIL?
- Cloud Computing
- Cloud Costs
- Use Case: GATK
- Use Case: GWAS
- Use Case: eQTL
- Video Gallery
- Anvil
- Terra
- Dockstore
- Galaxy
- Seqr
- Workshop Archive
- Workshop Archive
- Reference
- GTEx v8 - Egress Instructions
- Cross Platform Data Access with GA4GH DRS in Terra
Dockstore Videos
Selected videos from the Dockstore YouTube Channel are listed below.
Dockstore: An Introduction
Dockstore is a platform for sharing portable, container-based tools and workflows written in CWL, WDL, and Nextflow.
In this webinar, we will cover the basics of Dockstore, how it is useful for the community, and how to use it in your research. We will cover the fundamentals of finding workflows on the registry and provide examples of running them on sample data.
Slides are available here.
Data Analysis on AnVIL - Use Cases
A presentation by Beth Sheets on Data Analysis on AnVIL - Use Cases, June 11, 2020. Slides are located here.
Dockstore Fundamentals
This video is a hands-on workshop to train a beginner on the fundamental technologies used to create portable and reproducible workflows.
Viewers will learn how to use Docker for packaging software into containers, how to write analytical workflows in a descriptor language (CWL, WDL, or Nextflow), and how to publish these workflows on Dockstore for sharing with others.
We will cover basic Dockstore features such as running workflows using the Dockstore command-line interface and end with an overview of more advanced topics like best practices for workflows, publishing using DOIs, and sharing collections of workflows through organizations.
The main Dockstore site is at https://dockstore.org.
See further take-home materials at https://docs.google.com/document/d/1q....
See presentation slides at https://docs.google.com/presentation/....